PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G054400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 845aa    MW: 95889.9 Da    PI: 7.4576
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G054400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1842.4e-2685174289
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                           fY +YA +vGFsvr+++s+ksk +++i++ +fvCs+eg+++e++    ++k+r++ a+ r gC+a+l+v ++ d+kw vtkl++eHnHe
  Sobic.007G054400.1.p  85 FYIAYAGRVGFSVRIARSRKSKCSESIIMLRFVCSREGFSKEKRVVaaAKKTRKRPASIREGCNAMLEVLRRGDSKWIVTKLVKEHNHE 173
                           9***************************************99887666788889999*******************************9 PP

                  FAR1  89 l 89 
                           +
  Sobic.007G054400.1.p 174 V 174
                           5 PP

2FAR160.16.8e-19208298291
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                           fY +YA++vGF+ r+++s+ks ++++ ++ ++vCs++ +++ ++++  ++k+ r    +r gC+a +++ ++ +++w v+kl leH+He
  Sobic.007G054400.1.p 208 FYYSYASRVGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRENNgeDTKRVRALDPSRDGCDALFEIIRKGKDTWTVSKLILEHTHE 295
                           9*******************9.6777*************99999995555666677789****************************** PP

                  FAR1  89 lap 91 
                           l+p
  Sobic.007G054400.1.p 296 LNP 298
                           975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-2485174IPR004330FAR1 DNA binding domain
PfamPF031013.8E-16208298IPR004330FAR1 DNA binding domain
PfamPF105511.1E-18399490IPR018289MULE transposase domain
PROSITE profilePS509669.569678714IPR007527Zinc finger, SWIM-type
PfamPF044347.4E-5688710IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-5689716IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MMEPQVVDLE DDSINFWASL GVSPHVDQMP LHNVQIVDHQ AQPPLAAAVA QPQSVCRDLF  60
PVESDACLEP RLGMEFESGE AAKTFYIAYA GRVGFSVRIA RSRKSKCSES IIMLRFVCSR  120
EGFSKEKRVV AAAKKTRKRP ASIREGCNAM LEVLRRGDSK WIVTKLVKEH NHEVGLPSRV  180
QYIAIESDTV VDPYIGMEFE SLESAKTFYY SYASRVGFEA RVRQSRKSQD ESLKMLKLVC  240
SRHRYHSGRE NNGEDTKRVR ALDPSRDGCD ALFEIIRKGK DTWTVSKLIL EHTHELNPAP  300
ASKVHCVRSQ GEVLVIANNF ADTRNLLLNG QDSQYPREMR YNDLGPEDAQ SLFEYLKKRQ  360
EEDPSFFYAV QHEMNGHNAN IFWADAKARM AYYHFGDAVR FETAYRKNKE TIPIVIFSGV  420
NHHVQPVVFG CALLLDDSEA SFTWLFEKWL EAMHMGPPVS LLSELNQGMT AAVAKVLPNT  480
HHIFCEKHIL DTMKEDLHGT CPDPEAFVTD LRKCIDGSRI EELFDSGWNS VIIKHELSNN  540
ELLQSLYDIR QQWAPAYTKK AFYPRNLMPT KCGSIEKAIE KYFSSKTELR VAVWQLGQAI  600
SSSFEAEVQA DYFTMFQMPA LSTASPVEKQ GSSIFTSTIF ALFQGQFVDS FGYHAERLDD  660
DTVHKYRVKR YEGDEEIHTV YFNPDRSTVN CSCCLFESCG ILCRHALRIF IIEGVRDLPK  720
AYILKRWTKH AKNIITSDNY TDLRGDHEDP STARFNDLCC HVVKFAKEGS KSSEIYAVAK  780
DALSKAFDEV VQSSKNFRGQ KNPQSYTMSL KRPIKKFGKA KDSSGKSSKR SASKNPLMES  840
DDVT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678251.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_008678252.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLK7TWT70.0K7TWT7_MAIZE; FAR1-domain family sequence
STRINGGRMZM2G302323_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-122FAR1-related sequence 5